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Filamentous Fungal Gene Expression Database

  New and Noteworthy

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2010-08-22FTP InstructionChip-seq or RNA-seq raw data should be submitted by FTP client.
Upload files, please read [FTP Upload Documentation] first.
Download files, please read [Raw Data Download Documentation] first.
2010-01-04FFGED PublicationFFGED publication is available at pubmed.
2009-08-04Updates for uploading results fileDue to recent updates of BAGEL, the function to upload results file and plot gene expression figures have been correspondingly updated. The steps to plot figures automatically are: (1) enter the number of rows to be skipped, (2) indicate whether the uploaded file is generated by BAGEL or not, and (3) set the columns and headers for each experimental variable.
2009-07-29Updates for AnnotationAnnotation information have been updated for Aspergillus fumigatus, Aspergillus nidulans, Coccidioides immitis, Coprinus cinereus, Fusarium graminearum, Fusarium verticillioides, Histoplasma capsulatum, Magnaporthe grisea, and Neurospora crassa. Automatic online annotation for raw data file, normalized file and results file has also been changed.
2009-07-27KEGG PathwayKEGG pathway information for several species have been integrated into the database.
2009-05-13Annotation for Neurospora crassa from the Broad InstituteThe annotation for Neurospora crassa, extracted from the Broad Institute, has been added to the database.
2009-04-20Multiple Files UploadA new function to upload multiple files has been incorporated into the database. More than one file can be selected and uploaded at one time.
2009-04-15Update for analysis result fileTab-delimited file for analysis result is required, aiming to enable the database to plot gene expression levels against variable conditions.
2009-04-14Public DataPublic experiments and public results have been merged into "Public Data".
2009-03-24Embedding Public ResultsTo ease data exchange and sharing, a new page has been added to the database, by embedding public data in any website or blog by pasting the code into the web page. See an example for details.