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Filamentous Fungal Gene Expression Database


  • Tian C, Kasuga T, Sachs MS, Glass NL. Transcriptional profiling of cross pathway control in Neurospora crassa and comparative analysis of the Gcn4 and CPC1 regulons. Eukaryot Cell. 2007 Jun;6(6):1018-29.
  • Dunlap, J.C., K.A. Borkovich, M.R. Henn, G.E. Turner, M.S. Sachs, N.L. Glass, K. McCluskey, M. Plamann, J.E. Galagan, B.W. Birren, R.L. Weiss, J.P. Townsend, J.J. Loros, M.A. Nelson, R. Lambreghts, H.V. Colot, G. Park, P. Collopy, C. Ringelberg, C. Crew, L. Litvinkova, D. DeCaprio, H.M. Hood, S. Curilla, M. Shi, M. Crawford, M. Koerhsen, P. Montgomery, L. Larson, M. Pearson, T. Kasuga, C. Tian, M. Basturkmen, L. Altamirano, J. Xu, 2007. Enabling a community to dissect an organism: overview of the Neurospora functional genomics project. Advances in Genetics 57: 49-69.
  • Kasuga, T., Townsend, J.P., Tian, Ch., Gilbert, L.B., Mannhaupt, G., Taylor, J.W., and Glass N.L., 2005. Long-ligomer microarray profiling in Neurospora crassa reveals the transcriptional program underlying biochemical and physiological events of conidial germination. Nucleic Acids Research 33(20): 6469-85.
  • Townsend, J.P., and J.W. Taylor, 2005. Designing experiments using spotted microarrays to detect gene regulation differences within and among species. In "Methods in molecular evolution: producing the biochemical data", Zimmer, E., and Roalson, E., eds., Academic Press: Methods in Enzymology, Volume 395.
  • Townsend, J.P. 2004. Resolution of large and small differences in gene expression using models for the Bayesian analysis of gene expression levels and spotted DNA microarrays. BMC Bioinformatics 5: 54.
  • Townsend J.P. 2003. Multifactorial experimental design and the transitivity of ratios with spotted DNA microarrays. BMC Genomics 4:41.
  • Townsend, J.P., and D.L. Hartl. 2002. Bayesian analysis of gene expression levels: statistical quantification of relative mRNA level across multiple strains or treatments. Genome Biology 3 (12): research0071.1-0071.16.